Changelog

Source: NEWS.md

scMaSigPro 0.0.4 (2024-07-30)

• Dependency Changes
  • Removed hard dependency on RColorConesa and ComplexUpset.
  • Removed assertthat, stringr from namespace.
  • Removed maSigPro::position from namespace.
• Plotting Updates
  • Updated plot functions to use a custom palette.
  • Updated plotTrendCluster function for distinct layers.
  • Enhanced plotIntersect() with return capabilities.
  • Enhanced plotTrend with curves, lines, and points.
  • Updated ordering by frequency in UpsetR.
• Function Updates
  • Added clean_string() internal function.
  • Added sc.restruct() function.
  • Exported pb_helpers().
• Documentation Updates
  • General code styling.
  • Updated README with citation information.
  • Single comprehensive data documentation.
  • Added a new vignette.
• Bug Fixes
  • Removed patchwork call.

scMaSigPro 0.0.3 (2024-03-3)

• Bug fixes
  • eSparse() and eDense() indexes
  • Removed the ComplexUpset error due to ggplot 3.5.0.
• Remove Package Dependence
  • SummarizedExperiment
  • ComplexUpset
• Package Suggestions Added
  • Patchwork
  • ComplexUpset
  • UpSetR
• Updated Test cases
  • Functionality of eSparse() and eDense()
  • Testing sc.squeeze() against manual pseudo-bulking

scMaSigPro 0.0.1 (2023-12-20)

• Initial Github release.