Generate UpSet Plot — plotIntersect • scMaSigPro

Generate UpSet Plot on Intersection of Significant Genes from scMaSigPro object. It is a wrapper `UpSetR::upset`.

plotIntersect(
  scmpObj,
  min_intersection_size = 1,
  keep_empty_groups = FALSE,
  width_ratio = 0.1,
  show_sets_size = FALSE,
  return = FALSE
)

Arguments

scmpObj: An object of class ScMaSigPro.
min_intersection_size: Minimal number of observations in an intersection for it to be included.
keep_empty_groups: Whether empty sets should be kept (including sets which are only empty after filtering by size)
width_ratio: Ratio of the overall set size width to intersection matrix width.
show_sets_size: The overall set sizes plot, e.g. from upset_set_size()
return: If set to true, it will return dataframe from the UpSetR::fromList(). (Default is TRUE)

upset object for 'UpSetR'.