Get Features from scMaSigPro Object

This function extracts features from an object of class `scMaSigPro` based on a specified query. The function query the coefficients matrix.

queryCoeff(
  scmpObj,
  rsq = 0.7,
  p_value = scmpObj@Parameters@p_value,
  includeInflu = TRUE,
  query = "pseudotime_path",
  change = NULL,
  strictly = FALSE,
  verbose = TRUE
)

Arguments

scmpObj

An object of class ScMaSigPro.

rsq

Coefficient of determination or R-squared value threshold.

p_value

Overall model significance.

includeInflu

Whether to include genes with influential observations.

query

A string specifying the type of query.

change

The effective change at the end of the pseudotime. (Default is NULL)

strictly

If `change != NULL`, selects features if all coefficients have similar change.

verbose

Print detailed output in the console. (Default is TRUE)

Value

A subset of matrix of coefficients.

See also

`scMaSigPro::sc.filter()`

Author

Priyansh Srivastava spriyansh29@gmail.com.