Create ScMaSigPro Object — create

`create_scmp()` initializes a ScMaSigPro object with the given counts, cell level metadata, and other optional parameters.

create_scmp(
  counts,
  cell_data,
  feature_data,
  bin_counts = NULL,
  bin_cell_data = NULL,
  ptime_col,
  path_col,
  use_as_bin = FALSE
)

Arguments

counts: A matrix containing the raw expression counts.
cell_data: A data frame containing the cell level metadata.
feature_data: A data frame containing the feature level metadata.
bin_counts: A matrix containing the binned counts. (Only if use_as_bin == TRUE)
bin_cell_data: A data frame containing the binned cell level metadata. (Only if use_as_bin == TRUE)
ptime_col: A character string representing the column name for inferred Pseudotime values. (Default is "Pseudotime")
path_col: A character string representing the column name for branching path assignment. (Default is `path_prefix`)
use_as_bin: A logical indicating to run MaSigPro analysis without pseudotime binning. Defaults to FALSE.

An object of class ScMaSigPro, with aligned pseudotime.